Tutorial on how to save a figure

Figures of the reactor setup or the influent characteristics can be saved using the savename parameter.

import biops
r = biops.ifas.Reactor()
r.view_process(savename='path_and_name_of_figure')
r.view_influent(savename='path_and_name_of_figure')

If you run a simulation and then plot the results using matplotlib.pyplot, you can save the figures using plt.savefig. Here is an example where we have run a biofilm simulation and the data is stored in the variable r.biofilmlogger. The last statement in the code saves the figure.

import matplotlib.pyplot as plt
fig, ax = plt.subplots(figsize=(20/2.54, 17/2.54))
ax.plot(r.biofilmlogger['1']['Conc'][20.0]['thickness']*10**6, r.biofilmlogger['1']['Conc'][20.0]['S_O2'])
plt.savefig('path_and_name_of_figure')